Okay, here my super bomb ratio is 1 so that the max super bombs is equal to the max regular bombs:
Here's what happens when I use the bomb refill cheat before I mess with the Link Data Menu:
The number of super bombs is set to the max number of normal bombs
But here's what happens after I mess with the Link Data:
The number of super bombs only set to 1/4 of the max number of normal bombs regardless of super bomb ratio, and I have to reset the max number of normal bombs to get the correct number of super bombs; if the ratio was 2, then the super bombs should be set to 1/2 the max number of normal bombs, etc.
PS: Level 4 cheat is alpha