Found using Light of the Heavens
In the 3rd Dungeon "Sky Tower" 2nd Floor, there is an area where one must hookshot around from one section to the other while statues shoot "Flame" at you. If by some chance you fall into a direct warp while using the hookshot, link gets stuck in the hookshot firing pose, the sound sticks, and you cannot move. Only way out is to end the game.
Looks like there are some scripts involve to make a "falling" animation when you touch the warp, followed by being returned to the beginning of that room. I'm not sure if the script made this clash, but since I haven't seen anything in the change log of any hookshot related fixes (save the chains being left behind), I figure I better report it.
Also it seems the flame's hitbox is small on this game. Don't think it's a setting, but if I'm standing in the middle of 2 tiles (or the corner of 4), flame attacks travelling straight at me will miss me to either side (or if two side by side in front and 2 side by side 90degrees to the right or left fire, they all miss me). Don't know if this is suppose to happen or not.