You think Hero of Time and Molka are more difficult than Link to Tortuga? Hm...
Freedoms are always tough puzzle wise. And there are places where the enemies are too. But he rarely, if ever, has screen after screen of swarms of wizzrobes and Darknuts.
I was stopped in Link to the Heavens by a room in level two with a timed puzzle after you used the boomerang.

I haven't tried Molka.