When you go into personal issues with religion, you get the standard "Well, not all religious people are like that, you just got unlucky." from believers. And to be honest, I agree with them, in fact I have a number of good friends who are all highly religious (my roomate is baptist), and I'm sure we all know a few gigantic assholes who are athiests or are at the very least apathetic.
I do have a problem with religion as a whole, but I've been trying to the past half hour to formulate my thoughts, and have only suceeded in writing a few paragraphs about how systems that don't encourage skepticisim are bad, so if anyone can bring a rebuttle to the table about how christianity encourages debate and free thought, please do so, because I certianly can't find any evidence for it.
EDIT: And I am aware that not all religious types are indoctrinated crazy people, but it seems like any 'free thought' in a religious community happens at the pleasure of whoever is in charge of the church or family.